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  ChromasPro 2.1.5-DNA测序图谱软件

ChromasPro是一款好用的DNA测序图谱软件,软件主要适用于专业的生物学人员使用,软件适用于测序的项目可以高达几百万碱基,并拥有实用的基本序列编辑、序列分析、生成限制位点和片段图以及搜索序列等多种功能,是您进行专业研究的好帮手。

ChromasPro功能

  • 以应用生物系统、Staden色谱图(SCF)、MegaBace (esd)、FASTA、EMBL、GenBank、SwissProt,、GenPept、GCG RSF和纯文本格式打开和保存序列。

  • 将重叠序列组装一致,自动显示含糊不清的序列并编辑。
  • 用高质量数据自动消除低质量序列并提高序列集合。
  • 查看检测基因型文件。
  • 生成限制位点和片段图,并且列举切割、无切割和片段。
  • 染色体图开放阅读框,借助G+C框架图,点击一下即可翻译ORFs。
  • 打印色谱图,限制位点和片段图,并且打开阅读框架图。
  • 执行核苷和蛋白质BLAST,通过NCBI网站搜索。
  • 通过ClustalW的界面执行多序列。
  • 逆向&补充序列和色谱图。
  • 通过准确匹配或最佳队列搜索序列。
  • 当编辑核苷酸系列时显示翻译。
  • 执行反向翻译和标出核苷酸退化。
  • 划分蛋白质的亲水性和抗原性。
  • 复制色谱图截面的图形粘贴到文档或演示文件中。

Technelysium has supplied software for DNA sequencing and analysis since the popular Chromas program was first released in 1996. Our software is intended for projects which do not require large software packages costing thousands of dollars. We have two products:

Chromas is a free, simple, easy-to-use viewer and editor for chromatograms (traces) from automated Sanger sequencers. It has many format conversion options including batch processing functions to handle many files at once. As of version 2.6 it can use PeakTrace RP to enhance .ab1 files and extract more high-quality bases (this is a paid service).

ChromasPro is for assembly of sequence reads into contigs, with a graphical contig editor which displays aligned chromatograms. It also peforms general sequence analysis such as restriction enzyme mapping, open-reading-frame searches, and BLAST submission.

ChromasPro is suitable for DNA sequence assembly projects up to a few megabases, and basic sequence editing and analysis. It is able to assemble data from Sanger sequencers such as ABI, and 454 and Illumina next-generation sequencers, with up to 1,000,000 sequences if 8 Gb RAM is available. ChromasPro has the following features:

  • Open sequences in Applied Biosystems .ab1, Staden Chromatogram (SCF and ZTR), 454 SFF, FASTA, FASTQ, EMBL, GenBank, SwissProt, GenPept, GCG RSF and plain text formats.
  • Save sequences in .ab1, .scf, .fasta and .fastq formats.
  • Assemble overlapping sequences using a graphical interface, generate a consensus and highlight ambiguities for editing.
  • Use quality data to automatically remove low quality sequence for improved sequence assembly.
  • Use a reference sequence as a scaffold for assembly.
  • Generate restriction site and fragment maps, and list cutters, non-cutters and fragments.
  • Map open reading frames, aided by a G+C frame plot, and translate ORFs with one click.
  • Print chromatograms, restriction site and fragment maps, and open reading frame maps.
  • Perform nucleotide and protein BLAST searches through the NCBI web site.
  • Perform multiple alignments by interfacing with ClustalW.
  • Reverse & complement sequences and chromatograms.
  • Search for sequences by exact matching or optimal alignment.
  • Display translations when editing nucleotide sequences.
  • Perform reverse translations and plot nucleotide degeneracy.
  • Plot hydrophilicity and antigenicity of proteins.
  • Copy an image of a chromatogram section for pasting into documents or presentations.

Compatible with Windows XP, Vista, 7, 8, 10.

Your free trial lasts for 14 days. Please see the purchase page for licensing.

Upgrade from earlier versions is free for licensed users.

Please note: ChromasPro 2 will install separately from versions older than 1.9.9. It is recommended that you uninstall any old version present. See the version history for changes to recent versions.


 


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